Synthesis of Boolean Networks from the Structure and Dynamics of Reaction Networks
👋 Hej! I am:
-
🧑🎓 a PhD in computational biology
I was working in CRAN/LORIA in the capsid team, supervised by Taha Boukhobza & Malika Smail-Tabbone; - 💼 now looking for a post-doc in systems biology (formal modeling with Boolean networks and reaction networks);
- 🌍 a nancéienne (🇫🇷), ex-lilloise (🇫🇷), ex-parisienne (🇫🇷), happy to move abroad;
- 🐍 a Python lover (the programming language), also fond of Answer-Set Programming (ASP), but not much of R;
- 🐀 a rat care-taker (the cute animal);
- 🎸🎺 a musician (guitar and trumpet);
You may want:
- 📧 my e-mail address: athenais DOT vaginay AT loria DOT fr;
- 📰 my academic papers
on HAL
/ Google scholar
/ dblp
(/!\ dblp covers publications from computer science only) ; -
my LinkedIn (updated in August 2023);
-
my GitHub
(the code for my PhD research is stored on the private GitLabof my lab. It is accessible on request);
- 📭 my work address (I love letters!):
Bureau B142
Campus Scientifique, 615 Rue du Jardin-Botanique
54506 Vandœuvre-lès-Nancy
Feel free to get in touch with me (in french or english). :)
💬 Talks / Seminars / Interventions
All the slides are available on request.Synthesis of Boolean Networks from the Structure and Dynamics of Reaction Networks
Sélection et analyse de modèles pour les réseaux biologiques
ASKeD-BN: Automatic Synthesis of Boolean Networks from Knowledge and Data
From Chemical Reaction Networks to Boolean Networks, Automatically
Automatic synthesis of boolean networks from biological knowledge and data
Modelling Biological Systems with Boolean Networks
ASKeD-BN: Automatic Synthesis of Boolean Networks from Knowledge and Data
ASKeD-BN: Automatic Synthesis of Boolean Networks from Knowledge and Data
Quick Presentation
caspid "tea-time" seminars
monthly scheduled seminars of my team.ASKeD-BN: Automatic Synthesis of Boolean Networks from Knowledge and Data
Constrained Enumeration of Boolean Networks from Biological Data and Knowledge
The Search Space of the Logical Function Synthesis Problem — Application for Biological Systems
Automatic Transformation from Reaction Models to Boolean Models Using Answer-Sets Constrained by a Topology and an Abstracted Dynamic
Introduction to Critical Thinking (in french)
Presentation of my Thesis Project
📄 Publications
I put my papers on HAL.👩🏫 Teaching
- Université de Lorraine, Nancy, France
- Université Paris Diderot (P7), Paris, France