Synthesis of Boolean Networks from the Structure and Dynamics of Reaction Networks
7th July 2023
At Loria (PhD defense).
👋 Hej! I am:
-
🧑🎓 a PhD in computational biology
I was working in CRAN/LORIA in the capsid team, supervised by Taha Boukhobza & Malika Smail-Tabbone; - 💼 now looking for a post-doc in systems biology (formal modeling with Boolean networks and reaction networks);
- 🌍 a nancéienne (🇫🇷), ex-lilloise (🇫🇷), ex-parisienne (🇫🇷), happy to move abroad;
- 🐍 a Python lover (the programming language), also fond of Answer-Set Programming (ASP), but not much of R;
- 🐀 a rat care-taker (the cute animal);
- 🎸🎺 a musician (guitar and trumpet);
You may want:
- 📧 my e-mail address: athenais DOT vaginay AT loria DOT fr;
- 📰 my academic papers
on HAL
/ Google scholar
/ dblp
(/!\ dblp covers publications from computer science only) ; -
my LinkedIn (updated in August 2023);
-
my GitHub
(the code for my PhD research is stored on the private GitLab
of my lab.
It is accessible on request); - 📭 my work address (I love letters!):
Bureau B142
Campus Scientifique, 615 Rue du Jardin-Botanique
54506 Vandœuvre-lès-Nancy
Feel free to get in touch with me (in french or english). :)
💬 Talks / Seminars / Interventions
All the slides are available on request.Synthesis of Boolean Networks from the Structure and Dynamics of Reaction Networks
3rd July 2023
At Thematic workshop on networks and biological models inference (invited presentation).
Sélection et analyse de modèles pour les réseaux biologiques
13th December 2022
At FCH seminar (invited presentation).
ASKeD-BN: Automatic Synthesis of Boolean Networks from Knowledge and Data
31th July 2022
At ASPOCP'22@FLoC (paper highlight).
Highlighted paper
From Chemical Reaction Networks to Boolean Networks, Automatically
3rd December 2021
At GT Bioss' virtual seminar (invited presentation).
Automatic synthesis of boolean networks from biological knowledge and data
1st December 2021
Modelling Biological Systems with Boolean Networks
18th Nov 2021
At FCH' scientific day (invited presentation).
ASKeD-BN: Automatic Synthesis of Boolean Networks from Knowledge and Data
7th July 2021
ASKeD-BN: Automatic Synthesis of Boolean Networks from Knowledge and Data
23th Jun. 2021
At OLA'21 (paper presentation).
Conference paper
Quick Presentation
04 Apr. 2019
Loria Departement D5'day
caspid "tea-time" seminars
monthly scheduled seminars of my team.ASKeD-BN: Automatic Synthesis of Boolean Networks from Knowledge and Data
Jun. 2021
caspid "tea-time" seminar
Constrained Enumeration of Boolean Networks from Biological Data and Knowledge
19 Jan. 2021
caspid "tea-time" seminar
The Search Space of the Logical Function Synthesis Problem — Application for Biological Systems
26 May 2020
caspid "tea-time" seminar
Automatic Transformation from Reaction Models to Boolean Models Using Answer-Sets Constrained by a Topology and an Abstracted Dynamic
23 Jan. 2020
caspid "tea-time" seminar
Introduction to Critical Thinking (in french)
Feb. 2019
caspid "tea-time" seminar
Presentation of my Thesis Project
Nov. 2018
caspid "tea-time" seminar
📄 Publications
I put my papers on HAL.👩🏫 Teaching
- Université de Lorraine, Nancy, France
- Université Paris Diderot (P7), Paris, France